checkmate: Fast Argument Checks for Defensive R Programming

mllg/checkmate 5 Jan 2017

Dynamically typed programming languages like R allow programmers to write generic, flexible and concise code and to interact with the language using an interactive Read-eval-print-loop (REPL).

Computation

Synthetic Difference in Differences

synth-inference/synthdid 24 Dec 2018

We present a new estimator for causal effects with panel data that builds on insights behind the widely used difference in differences and synthetic control methods.

Methodology

$R^*$: A robust MCMC convergence diagnostic with uncertainty using gradient-boosted machines

TuringLang/MCMCChains.jl 17 Mar 2020

Markov chain Monte Carlo (MCMC) has transformed Bayesian model inference over the past three decades and is now a workhorse of applied scientists.

Methodology Applications

Exploring multi-dimensional spaces: a Comparison of Latin Hypercube and Quasi Monte Carlo Sampling Techniques

c-bata/goptuna 10 May 2015

The methods compared are Monte Carlo with pseudo-random numbers, Latin Hypercube Sampling, and Quasi Monte Carlo with sampling based on Sobol sequences.

Applications Computation

A Conceptual Introduction to Hamiltonian Monte Carlo

tpapp/DynamicHMC.jl 10 Jan 2017

Hamiltonian Monte Carlo has proven a remarkable empirical success, but only recently have we begun to develop a rigorous under- standing of why it performs so well on difficult problems and how it is best applied in practice.

Methodology

Diagnosing Suboptimal Cotangent Disintegrations in Hamiltonian Monte Carlo

tpapp/DynamicHMC.jl 3 Apr 2016

When properly tuned, Hamiltonian Monte Carlo scales to some of the most challenging high-dimensional problems at the frontiers of applied statistics, but when that tuning is suboptimal the performance leaves much to be desired.

Methodology

Optimizing The Integrator Step Size for Hamiltonian Monte Carlo

tpapp/DynamicHMC.jl 24 Nov 2014

Hamiltonian Monte Carlo can provide powerful inference in complex statistical problems, but ultimately its performance is sensitive to various tuning parameters.

Methodology Statistics Theory Statistics Theory

Predicting the Output From a Stochastic Computer Model When a Deterministic Approximation is Available

statnet/EpiModel 4 Feb 2019

The analysis of computer models can be aided by the construction of surrogate models, or emulators, that statistically model the numerical computer model.

Methodology

A dynamic Bayesian Markov model for health economic evaluations of interventions in infectious disease

statnet/EpiModel 21 Dec 2015

Standard MMs are static, whereas ODE systems are usually dynamic and account for herd immunity which is crucial to prevent overestimation of infection prevalence.

Methodology

Random lasso

skggm/skggm 18 Apr 2011

In step 2, a similar procedure to the first step is implemented with the exception that for each bootstrap sample, a subset of covariates is randomly selected with unequal selection probabilities determined by the covariates' importance.

Applications